Index

A

all_identifying_properties_exist() (caoscrawler.identifiable_adapters.IdentifiableAdapter method)

apply_transformers() (caoscrawler.converters.converters.Converter method)

B

BooleanElement (class in caoscrawler.structure_elements.structure_elements)

BooleanElementConverter (class in caoscrawler.converters.converters) braceidpattern (caoscrawler.converters.converters.CrawlerTemplate attribute)

C

caoscrawler module caoscrawler.authorize module caoscrawler.config module caoscrawler.converters module caoscrawler.converters.converters module caoscrawler.converters.hdf5_converter module caoscrawler.converters.rocrate module caoscrawler.converters.spss module caoscrawler.converters.xml_converter module caoscrawler.crawl module caoscrawler.debug_tree module caoscrawler.exceptions module caoscrawler.identifiable module caoscrawler.identifiable_adapters module caoscrawler.logging module caoscrawler.macros module caoscrawler.macros.macro_yaml_object module caoscrawler.scanner module caoscrawler.scripts module caoscrawler.scripts.generators module caoscrawler.stores module caoscrawler.structure_elements module caoscrawler.structure_elements.rocrate_structure_elements module caoscrawler.structure_elements.structure_elements module caoscrawler.sync_graph module caoscrawler.sync_node module caoscrawler.transformer_functions module caoscrawler.utils module caoscrawler.version module CaosDBIdentifiableAdapter (class in caoscrawler.identifiable_adapters) CfoodRequiredVersionError

check_cfood_version() (in module caoscrawler.version) check_identical() (in module caoscrawler.crawl) check_record() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) check_whether_parent_exists() (caoscrawler.crawl.Crawler static method) cleanup() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.rocrate.ROCrateConverter method) compact_entity_list_representation() (caoscrawler.crawl.Crawler static method) configure_server_side_logging() (in module caoscrawler.logging) convert_attributes() (in module caoscrawler.converters.hdf5_converter) convert_basic_element() (in module caoscrawler.converters.converters) convert_basic_element_with_nd_array() (in module caoscrawler.converters.hdf5_converter) convert_h5_element() (in module caoscrawler.converters.hdf5_converter) convert_value() (in module caoscrawler.identifiable_adapters) Converter (class in caoscrawler.converters.converters) converter_factory() (caoscrawler.converters.converters.Converter static method) ConverterValidationError crawl_directory() (caoscrawler.crawl.Crawler method) crawled_data (caoscrawler.crawl.Crawler property) Crawler (class in caoscrawler.crawl) crawler_main() (in module caoscrawler.crawl) CrawlerTemplate (class in caoscrawler.converters.converters) create_children() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.CSVTableConverter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.JSONFileConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.MarkdownFileConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.XLSXTableConverter method) (caoscrawler.converters.converters.YAMLFileConverter method) (caoscrawler.converters.hdf5_converter.H5DatasetConverter method) (caoscrawler.converters.hdf5_converter.H5FileConverter method) (caoscrawler.converters.hdf5_converter.H5GroupConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ELNFileConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.spss.SPSSConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLFileConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method) create_children_from_directory() (caoscrawler.converters.converters.DirectoryConverter static method) create_converter_registry() (in module caoscrawler.scanner) create_entity_summary() (caoscrawler.crawl.Crawler static method) create_path_value() (in module caoscrawler.converters.converters) create_property_query() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) create_query_for_identifiable() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) create_records() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.PropertiesFromDictConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (in module caoscrawler.converters.converters) create_scoped_copy() (caoscrawler.stores.Store method) create_transformer_registry() (in module caoscrawler.scanner) create_values() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) csv_to_datamodel() (in module caoscrawler.scripts.generators) csv_to_datamodel_main() (in module caoscrawler.scripts.generators) CSVTableConverter (class in caoscrawler.converters.converters)

D

date_parse() (in module caoscrawler.transformer_functions) DateElementConverter (class in caoscrawler.converters.converters) datetime_parse() (in module caoscrawler.transformer_functions) DatetimeElementConverter (class in caoscrawler.converters.converters) debug_build_usage_tree() (caoscrawler.crawl.Crawler static method) debug_matching() (caoscrawler.converters.converters.Converter static method) DebugTree (class in caoscrawler.debug_tree) default_matches (caoscrawler.converters.converters.BooleanElementConverter attribute) (caoscrawler.converters.converters.FloatElementConverter attribute) (caoscrawler.converters.converters.IntegerElementConverter attribute) (caoscrawler.converters.converters.TextElementConverter attribute) definition (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute) defmacro_constructor() (in module caoscrawler.macros.macro_yaml_object) Dict (class in caoscrawler.structure_elements.structure_elements) DictBooleanElement (class in caoscrawler.structure_elements.structure_elements)

DictBooleanElementConverter (class in caoscrawler.converters.converters) DictConverter (class in caoscrawler.converters.converters) DictDictElement (class in caoscrawler.structure_elements.structure_elements) DictDictElementConverter (class in caoscrawler.converters.converters) DictElement (class in caoscrawler.structure_elements.structure_elements) DictElementConverter (class in caoscrawler.converters.converters) DictFloatElement (class in caoscrawler.structure_elements.structure_elements) DictFloatElementConverter (class in caoscrawler.converters.converters) DictIntegerElement (class in caoscrawler.structure_elements.structure_elements) DictIntegerElementConverter (class in caoscrawler.converters.converters) DictListElement (class in caoscrawler.structure_elements.structure_elements) DictListElementConverter (class in caoscrawler.converters.converters) DictTextElement (class in caoscrawler.structure_elements.structure_elements) DictTextElementConverter (class in caoscrawler.converters.converters) Directory (class in caoscrawler.structure_elements.structure_elements) DirectoryConverter (class in caoscrawler.converters.converters)

E

ELNFileConverter (class in caoscrawler.converters.rocrate) execute_inserts_in_list() (caoscrawler.crawl.Crawler static method) execute_parent_updates_in_list() (caoscrawler.crawl.Crawler static method)

execute_updates_in_list() (caoscrawler.crawl.Crawler static method) export_entity() (caoscrawler.sync_node.SyncNode method) export_record_lists() (caoscrawler.sync_graph.SyncGraph method)

F

File (class in caoscrawler.structure_elements.structure_elements) FileConverter (class in caoscrawler.converters.converters) FileSystemStructureElement (class in caoscrawler.structure_elements.structure_elements)

filter_children() (caoscrawler.converters.converters.Converter method) FloatElement (class in caoscrawler.structure_elements.structure_elements) FloatElementConverter (class in caoscrawler.converters.converters) ForbiddenTransaction, [1]

G

GeneralStore (class in caoscrawler.stores) generate_run_id() (caoscrawler.crawl.Crawler method) get_caoscrawler_version() (in module caoscrawler.version) get_children_of_rt() (in module caoscrawler.identifiable_adapters) get_config_setting() (in module caoscrawler.config) get_dict_copied() (caoscrawler.stores.Store method) get_equivalent() (caoscrawler.sync_graph.SyncGraph method) get_file() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_identifiable() (caoscrawler.identifiable_adapters.IdentifiableAdapter method) get_identifying_referenced_entities() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) get_internal_id() (caoscrawler.stores.Store method)

get_name() (caoscrawler.structure_elements.structure_elements.StructureElement method) get_names_current_scope() (caoscrawler.stores.RecordStore method) get_options() (caoscrawler.converters.converters.CSVTableConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.converters.XLSXTableConverter method) get_records() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_records_current_scope() (caoscrawler.stores.RecordStore method) get_registered_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) get_representation() (caoscrawler.identifiable.Identifiable method) get_shared_resource_link() (in module caoscrawler.utils) get_storage() (caoscrawler.stores.Store method)

H

H5DatasetConverter (class in caoscrawler.converters.hdf5_converter) H5DatasetElement (class in caoscrawler.converters.hdf5_converter) H5FileConverter (class in caoscrawler.converters.hdf5_converter) H5GroupConverter (class in caoscrawler.converters.hdf5_converter)

H5GroupElement (class in caoscrawler.converters.hdf5_converter) H5NdarrayConverter (class in caoscrawler.converters.hdf5_converter) H5NdarrayElement (class in caoscrawler.converters.hdf5_converter) handle_value() (in module caoscrawler.converters.converters) has_parent() (in module caoscrawler.utils)

I

Identifiable (class in caoscrawler.identifiable) IdentifiableAdapter (class in caoscrawler.identifiable_adapters) ImpossibleMergeError inform_about_pending_changes() (caoscrawler.crawl.Crawler static method) initialize_converters() (caoscrawler.crawl.Crawler method) (in module caoscrawler.scanner)

INSERT (caoscrawler.crawl.SecurityMode attribute) IntegerElement (class in caoscrawler.structure_elements.structure_elements) IntegerElementConverter (class in caoscrawler.converters.converters) InvalidIdentifiableYAML is_identifiable_for_record() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method)

J

JSONFile (class in caoscrawler.structure_elements.structure_elements)

JSONFileConverter (class in caoscrawler.converters.converters)

L

ListElement (class in caoscrawler.structure_elements.structure_elements) ListElementConverter (class in caoscrawler.converters.converters) load_converters() (caoscrawler.crawl.Crawler method) load_definition() (caoscrawler.crawl.Crawler method) (in module caoscrawler.scanner)

load_from_yaml_definition() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) load_from_yaml_object() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) LocalStorageIdentifiableAdapter (class in caoscrawler.identifiable_adapters)

M

macro_constructor() (in module caoscrawler.macros.macro_yaml_object) MacroDefinition (class in caoscrawler.macros.macro_yaml_object) main() (in module caoscrawler.crawl) MarkdownFileConverter (class in caoscrawler.converters.converters) match() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DateElementConverter method) (caoscrawler.converters.converters.DatetimeElementConverter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method) match_name_and_value() (in module caoscrawler.converters.converters) message (caoscrawler.exceptions.ImpossibleMergeError attribute) MissingIdentifyingProperty MissingImport() (in module caoscrawler.utils) MissingRecordType MissingReferencingEntityError module caoscrawler caoscrawler.authorize caoscrawler.config caoscrawler.converters caoscrawler.converters.converters caoscrawler.converters.hdf5_converter caoscrawler.converters.rocrate caoscrawler.converters.spss caoscrawler.converters.xml_converter caoscrawler.crawl caoscrawler.debug_tree caoscrawler.exceptions caoscrawler.identifiable caoscrawler.identifiable_adapters caoscrawler.logging caoscrawler.macros caoscrawler.macros.macro_yaml_object caoscrawler.scanner caoscrawler.scripts caoscrawler.scripts.generators caoscrawler.stores caoscrawler.structure_elements caoscrawler.structure_elements.rocrate_structure_elements caoscrawler.structure_elements.structure_elements caoscrawler.sync_graph caoscrawler.sync_node caoscrawler.transformer_functions caoscrawler.utils caoscrawler.version

N

name (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute)

NoneElement (class in caoscrawler.structure_elements.structure_elements)

P

params (caoscrawler.macros.macro_yaml_object.MacroDefinition attribute) parent_in_list() (in module caoscrawler.sync_node) parse_args() (in module caoscrawler.authorize) (in module caoscrawler.crawl)

pattern (caoscrawler.converters.converters.CrawlerTemplate attribute) pname (caoscrawler.exceptions.ImpossibleMergeError attribute) PropertiesFromDictConverter (class in caoscrawler.converters.converters) property_in_list() (in module caoscrawler.sync_node)

R

read_column_types() (in module caoscrawler.converters.spss) RecordStore (class in caoscrawler.stores) referencing_entity_has_appropriate_type() (caoscrawler.identifiable_adapters.IdentifiableAdapter static method) register_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) remove_unnecessary_updates() (caoscrawler.crawl.Crawler static method) replace() (in module caoscrawler.transformer_functions) replace_entities_with_ids() (caoscrawler.crawl.Crawler method) replace_name_with_referenced_entity_id() (caoscrawler.crawl.Crawler static method)

replace_variables() (in module caoscrawler.converters.converters) restore_state() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) RETRIEVE (caoscrawler.crawl.SecurityMode attribute) retrieve_identified_record_for_identifiable() (caoscrawler.identifiable_adapters.CaosDBIdentifiableAdapter method) (caoscrawler.identifiable_adapters.IdentifiableAdapter method) (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) ROCrateConverter (class in caoscrawler.converters.rocrate) ROCrateEntity (class in caoscrawler.structure_elements.rocrate_structure_elements) ROCrateEntityConverter (class in caoscrawler.converters.rocrate)

S

save_debug_data() (caoscrawler.crawl.Crawler method) scan_directory() (in module caoscrawler.scanner) scan_structure_elements() (in module caoscrawler.scanner) scanner() (in module caoscrawler.scanner) SecurityMode (class in caoscrawler.crawl) set_id_of_node() (caoscrawler.sync_graph.SyncGraph method) set_ids_and_datatype_of_parents_and_properties() (caoscrawler.crawl.Crawler static method) setup() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.rocrate.ROCrateConverter method) SimpleFileConverter (class in caoscrawler.converters.converters) split() (in module caoscrawler.transformer_functions) split_restricted_path() (in module caoscrawler.crawl) spss_to_datamodel_main() (in module caoscrawler.converters.spss)

spss_to_yaml() (in module caoscrawler.converters.spss) SPSSConverter (class in caoscrawler.converters.spss) start_crawling() (caoscrawler.crawl.Crawler method) Store (class in caoscrawler.stores) store_state() (caoscrawler.identifiable_adapters.LocalStorageIdentifiableAdapter method) str_to_bool() (in module caoscrawler.converters.converters) StructureElement (class in caoscrawler.structure_elements.structure_elements) submatch() (in module caoscrawler.transformer_functions) substitute() (in module caoscrawler.macros.macro_yaml_object) substitute_dict() (in module caoscrawler.macros.macro_yaml_object) SyncGraph (class in caoscrawler.sync_graph) synchronize() (caoscrawler.crawl.Crawler method) SyncNode (class in caoscrawler.sync_node)

T

TableConverter (class in caoscrawler.converters.converters) TempID (class in caoscrawler.sync_node) TextElement (class in caoscrawler.structure_elements.structure_elements) TextElementConverter (class in caoscrawler.converters.converters) typecheck() (caoscrawler.converters.converters.Converter method) (caoscrawler.converters.converters.DictElementConverter method) (caoscrawler.converters.converters.DirectoryConverter method) (caoscrawler.converters.converters.ListElementConverter method) (caoscrawler.converters.converters.SimpleFileConverter method) (caoscrawler.converters.converters.TableConverter method) (caoscrawler.converters.hdf5_converter.H5DatasetConverter method) (caoscrawler.converters.hdf5_converter.H5GroupConverter method) (caoscrawler.converters.hdf5_converter.H5NdarrayConverter method) (caoscrawler.converters.rocrate.ROCrateConverter method) (caoscrawler.converters.rocrate.ROCrateEntityConverter method) (caoscrawler.converters.xml_converter.XMLAttributeNodeConverter method) (caoscrawler.converters.xml_converter.XMLTagConverter method) (caoscrawler.converters.xml_converter.XMLTextNodeConverter method)

U

unchecked_contains_circular_dependency() (caoscrawler.sync_graph.SyncGraph method) UPDATE (caoscrawler.crawl.SecurityMode attribute)

update() (caoscrawler.stores.Store method) (caoscrawler.sync_node.SyncNode method)

V

validate_against_json_schema() (in module caoscrawler.converters.converters)

values (caoscrawler.exceptions.ImpossibleMergeError attribute)

X

XLSXTableConverter (class in caoscrawler.converters.converters) XMLAttributeNode (class in caoscrawler.structure_elements.structure_elements) XMLAttributeNodeConverter (class in caoscrawler.converters.xml_converter) XMLFileConverter (class in caoscrawler.converters.xml_converter)

XMLTagConverter (class in caoscrawler.converters.xml_converter) XMLTagElement (class in caoscrawler.structure_elements.structure_elements) XMLTextNode (class in caoscrawler.structure_elements.structure_elements) XMLTextNodeConverter (class in caoscrawler.converters.xml_converter)

Y

YAMLFileConverter (class in caoscrawler.converters.converters)