caosadvancedtools
0.7.0
Contents:
Getting started
Concepts
The Caosdb Crawler
YAML data model specification
caosadvancedtools
caosadvancedtools
Index
Index
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Y
A
AbstractCache (class in caosadvancedtools.cache)
AbstractCFood (class in caosadvancedtools.cfood)
AbstractFileCFood (class in caosadvancedtools.cfood)
access() (caosadvancedtools.cfood.FileGuide method)
add() (caosadvancedtools.datamodel_problems.DataModelProblems static method)
(caosadvancedtools.structure_mapping.EntityMapping method)
add_files() (in module caosadvancedtools.cfood)
add_header() (in module caosadvancedtools.pandoc_header_tools)
add_property_from_data_element() (in module caosadvancedtools.converter.labfolder_export)
add_value_list() (in module caosadvancedtools.scifolder.utils)
all_groups_equal() (caosadvancedtools.cfood.CMeal class method)
Analysis (caosadvancedtools.scifolder.withreadme.DataModel attribute)
AnalysisCFood (class in caosadvancedtools.scifolder.analysis_cfood)
ApiClient (class in caosadvancedtools.bloxberg.swagger_client.api_client)
ApiException
append() (caosadvancedtools.models.data_model.DataModel method)
apply_list_of_updates() (in module caosadvancedtools.crawler)
assure_has_description() (in module caosadvancedtools.cfood)
assure_has_parent() (in module caosadvancedtools.cfood)
assure_has_property() (in module caosadvancedtools.cfood)
assure_name_format() (in module caosadvancedtools.table_importer)
assure_name_is() (in module caosadvancedtools.cfood)
assure_object_is_in_list() (in module caosadvancedtools.cfood)
assure_parents_are() (in module caosadvancedtools.cfood)
assure_property_is() (in module caosadvancedtools.cfood)
assure_special_is() (in module caosadvancedtools.cfood)
attach() (caosadvancedtools.cfood.AbstractCFood method)
attribute_map (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch attribute)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate attribute)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate attribute)
(caosadvancedtools.bloxberg.swagger_client.models.http_validation_error.HTTPValidationError attribute)
(caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError attribute)
auth_settings() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration method)
B
BaseTableExporter (class in caosadvancedtools.table_export)
Batch (class in caosadvancedtools.bloxberg.swagger_client.models.batch)
belongs_to_meal() (caosadvancedtools.cfood.CMeal method)
binaries (caosadvancedtools.scifolder.withreadme.DataModel attribute)
Bloxberg (class in caosadvancedtools.bloxberg.bloxberg)
C
Cache (class in caosadvancedtools.cache)
call_api() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
call_script() (in module caosadvancedtools.serverside.generic_analysis)
caosadvancedtools
module
caosadvancedtools.bloxberg
module
caosadvancedtools.bloxberg.bloxberg
module
caosadvancedtools.bloxberg.swagger_client
module
caosadvancedtools.bloxberg.swagger_client.api
module
caosadvancedtools.bloxberg.swagger_client.api.certificate_api
module
caosadvancedtools.bloxberg.swagger_client.api.pdf_api
module
caosadvancedtools.bloxberg.swagger_client.api_client
module
caosadvancedtools.bloxberg.swagger_client.configuration
module
caosadvancedtools.bloxberg.swagger_client.models
module
caosadvancedtools.bloxberg.swagger_client.models.batch
module
caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate
module
caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate
module
caosadvancedtools.bloxberg.swagger_client.models.http_validation_error
module
caosadvancedtools.bloxberg.swagger_client.models.validation_error
module
caosadvancedtools.bloxberg.swagger_client.rest
module
caosadvancedtools.cache
module
caosadvancedtools.cfood
module
caosadvancedtools.cfoods
module
caosadvancedtools.cfoods.h5
module
caosadvancedtools.converter
module
caosadvancedtools.converter.labfolder_export
module
caosadvancedtools.crawler
module
caosadvancedtools.datainconsistency
module
caosadvancedtools.datamodel_problems
module
caosadvancedtools.example_cfood
module
caosadvancedtools.export_related
module
caosadvancedtools.guard
module
caosadvancedtools.import_from_xml
module
caosadvancedtools.loadFiles
module
caosadvancedtools.models
module
caosadvancedtools.models.data_model
module
caosadvancedtools.models.parser
module
caosadvancedtools.pandoc_header_tools
module
caosadvancedtools.read_md_header
module
caosadvancedtools.scifolder
module
caosadvancedtools.scifolder.analysis_cfood
module
caosadvancedtools.scifolder.experiment_cfood
module
caosadvancedtools.scifolder.generic_pattern
module
caosadvancedtools.scifolder.publication_cfood
module
caosadvancedtools.scifolder.result_table_cfood
module
caosadvancedtools.scifolder.simulation_cfood
module
caosadvancedtools.scifolder.software_cfood
module
caosadvancedtools.scifolder.utils
module
caosadvancedtools.scifolder.withreadme
module
caosadvancedtools.serverside
module
caosadvancedtools.serverside.generic_analysis
module
caosadvancedtools.serverside.helper
module
caosadvancedtools.serverside.logging
module
caosadvancedtools.structure_mapping
module
caosadvancedtools.suppressKnown
module
caosadvancedtools.table_converter
module
caosadvancedtools.table_export
module
caosadvancedtools.table_importer
module
caosadvancedtools.utils
module
caosadvancedtools.webui_formatter
module
CertificateApi (class in caosadvancedtools.bloxberg.swagger_client.api.certificate_api)
certify() (caosadvancedtools.bloxberg.bloxberg.Bloxberg method)
certify_entity() (in module caosadvancedtools.bloxberg.bloxberg)
check_cache() (caosadvancedtools.cache.AbstractCache method)
check_columns() (caosadvancedtools.table_importer.TableImporter method)
check_dataframe() (caosadvancedtools.table_importer.TableImporter method)
check_datatype() (caosadvancedtools.table_importer.TableImporter method)
check_existing() (caosadvancedtools.cache.IdentifiableCache method)
check_matches() (caosadvancedtools.crawler.Crawler method)
check_missing() (caosadvancedtools.table_importer.TableImporter method)
check_reference_field() (in module caosadvancedtools.table_importer)
check_referenced_script() (in module caosadvancedtools.serverside.generic_analysis)
check_unique() (caosadvancedtools.table_importer.TableImporter method)
check_win_path() (in module caosadvancedtools.utils)
clean_header() (in module caosadvancedtools.pandoc_header_tools)
cleanXML() (in module caosadvancedtools.cache)
CMeal (class in caosadvancedtools.cfood)
collect_cfoods() (caosadvancedtools.crawler.Crawler method)
collect_entities() (caosadvancedtools.models.data_model.DataModel method)
collect_existing_structure() (in module caosadvancedtools.structure_mapping)
collect_information() (caosadvancedtools.cfood.AbstractCFood method)
(caosadvancedtools.cfoods.h5.H5CFood method)
(caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method)
(caosadvancedtools.scifolder.publication_cfood.PublicationCFood method)
(caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method)
(caosadvancedtools.scifolder.software_cfood.SoftwareCFood method)
(caosadvancedtools.table_export.BaseTableExporter method)
combine_ignore_files() (in module caosadvancedtools.loadFiles)
compile_file_list() (in module caosadvancedtools.loadFiles)
Configuration (class in caosadvancedtools.bloxberg.swagger_client.configuration)
configure_server_side_logging() (in module caosadvancedtools.serverside.logging)
construct_mapping() (caosadvancedtools.models.parser.SafeLineLoader method)
context() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
ControllerCertToolsGeneratePdfJsonCertificate (class in caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate)
ControllerCertToolsGenerateUnsignedCertificateJsonCertificate (class in caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate)
convert_path() (caosadvancedtools.scifolder.withreadme.WithREADME method)
convert_size() (in module caosadvancedtools.loadFiles)
convert_win_paths() (caosadvancedtools.scifolder.withreadme.WithREADME method)
crawl() (caosadvancedtools.crawler.Crawler method)
crawled_file() (caosadvancedtools.cfood.AbstractFileCFood property)
Crawler (class in caosadvancedtools.crawler)
create_bloxberg_certificate_create_bloxberg_certificate_post() (caosadvancedtools.bloxberg.swagger_client.api.certificate_api.CertificateApi method)
create_bloxberg_certificate_create_bloxberg_certificate_post_with_http_info() (caosadvancedtools.bloxberg.swagger_client.api.certificate_api.CertificateApi method)
create_cache() (caosadvancedtools.cache.AbstractCache method)
(caosadvancedtools.cache.IdentifiableCache method)
(caosadvancedtools.cache.UpdateCache method)
(caosadvancedtools.suppressKnown.SuppressKnown method)
create_dummy_file() (in module caosadvancedtools.import_from_xml)
create_entity_link() (in module caosadvancedtools.utils)
create_entry() (in module caosadvancedtools.converter.labfolder_export)
create_file() (in module caosadvancedtools.converter.labfolder_export)
create_files_list() (in module caosadvancedtools.scifolder.utils)
create_identifiable_experiment() (caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method)
create_identifiables() (caosadvancedtools.cfood.AbstractCFood method)
(caosadvancedtools.cfood.RowCFood method)
(caosadvancedtools.cfoods.h5.H5CFood method)
(caosadvancedtools.example_cfood.ExampleCFood method)
(caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method)
(caosadvancedtools.scifolder.publication_cfood.PublicationCFood method)
(caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood method)
(caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method)
(caosadvancedtools.scifolder.software_cfood.SoftwareCFood method)
create_project() (in module caosadvancedtools.converter.labfolder_export)
create_query_for_identifiable() (caosadvancedtools.crawler.Crawler static method)
create_re_for_file_list() (in module caosadvancedtools.loadFiles)
create_structure() (caosadvancedtools.cfoods.h5.H5CFood class method)
credential_subject() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
crid() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
crid_type() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
CSVImporter (class in caosadvancedtools.table_importer)
D
DataInconsistencyError
DataModel (class in caosadvancedtools.models.data_model)
(class in caosadvancedtools.scifolder.withreadme)
DataModelError
DataModelProblems (class in caosadvancedtools.datamodel_problems)
date (caosadvancedtools.scifolder.withreadme.DataModel attribute)
date_converter() (in module caosadvancedtools.table_importer)
datetime_converter() (in module caosadvancedtools.table_importer)
debug() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration property)
defineParser() (in module caosadvancedtools.export_related)
(in module caosadvancedtools.import_from_xml)
DELETE() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
demo_run() (in module caosadvancedtools.bloxberg.bloxberg)
description (caosadvancedtools.scifolder.withreadme.DataModel attribute)
deserialize() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
detail() (caosadvancedtools.bloxberg.swagger_client.models.http_validation_error.HTTPValidationError property)
display_html() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
E
enable_ipfs() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch property)
ensure_data_model() (in module caosadvancedtools.bloxberg.bloxberg)
entities_without() (caosadvancedtools.models.data_model.DataModel static method)
EntityMapping (class in caosadvancedtools.structure_mapping)
evaluate_exception() (caosadvancedtools.datamodel_problems.DataModelProblems static method)
ExampleCFood (class in caosadvancedtools.example_cfood)
existing_instances (caosadvancedtools.cfood.CMeal attribute)
Experiment (caosadvancedtools.scifolder.withreadme.DataModel attribute)
ExperimentCFood (class in caosadvancedtools.scifolder.experiment_cfood)
export() (in module caosadvancedtools.export_related)
export_related_to() (in module caosadvancedtools.export_related)
extend() (caosadvancedtools.models.data_model.DataModel method)
F
FileCrawler (class in caosadvancedtools.crawler)
FileGuide (class in caosadvancedtools.cfood)
filter() (caosadvancedtools.suppressKnown.SuppressKnown method)
find_existing() (caosadvancedtools.crawler.Crawler static method)
find_or_insert_identifiables() (caosadvancedtools.crawler.Crawler static method)
find_records_that_reference_ids() (in module caosadvancedtools.utils)
find_referenced_files() (caosadvancedtools.scifolder.withreadme.WithREADME method)
folder_to_type() (in module caosadvancedtools.scifolder.publication_cfood)
format() (caosadvancedtools.webui_formatter.WebUI_Formatter method)
from_table() (in module caosadvancedtools.table_converter)
from_tsv() (in module caosadvancedtools.table_converter)
G
generate_pdf_generate_pdf_post() (caosadvancedtools.bloxberg.swagger_client.api.pdf_api.PdfApi method)
generate_pdf_generate_pdf_post_with_http_info() (caosadvancedtools.bloxberg.swagger_client.api.pdf_api.PdfApi method)
generate_property_name() (in module caosadvancedtools.table_converter)
GET() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
get() (caosadvancedtools.cache.UpdateCache method)
get_api_key_with_prefix() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration method)
get_argument_parser() (in module caosadvancedtools.serverside.helper)
get_author_from_entry() (in module caosadvancedtools.converter.labfolder_export)
get_basic_auth_token() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration method)
get_cache_schema_version() (caosadvancedtools.cache.AbstractCache method)
(caosadvancedtools.cache.IdentifiableCache method)
(caosadvancedtools.cache.UpdateCache method)
get_cache_version() (caosadvancedtools.cache.AbstractCache method)
get_data() (in module caosadvancedtools.serverside.helper)
get_default_file_name() (caosadvancedtools.cache.AbstractCache method)
(caosadvancedtools.cache.IdentifiableCache method)
(caosadvancedtools.cache.UpdateCache method)
get_description() (in module caosadvancedtools.scifolder.withreadme)
get_entity() (in module caosadvancedtools.cfood)
get_entity_for_path() (in module caosadvancedtools.cfood)
get_entity_ids_from_include_file() (in module caosadvancedtools.scifolder.utils)
get_existing_entities() (caosadvancedtools.models.data_model.DataModel static method)
get_file_via_download() (in module caosadvancedtools.serverside.helper)
get_files_referenced_by_field() (in module caosadvancedtools.scifolder.utils)
get_glob() (in module caosadvancedtools.scifolder.withreadme)
get_header() (in module caosadvancedtools.pandoc_header_tools)
(in module caosadvancedtools.read_md_header)
get_ids_for_entities_with_names() (in module caosadvancedtools.cfood)
get_ids_of_related_entities() (in module caosadvancedtools.export_related)
get_inserts() (caosadvancedtools.cache.UpdateCache method)
get_pretty_xml() (in module caosadvancedtools.cache)
get_previous_version() (caosadvancedtools.cache.UpdateCache static method)
get_property() (in module caosadvancedtools.cfood)
get_re() (caosadvancedtools.cfood.AbstractFileCFood class method)
(caosadvancedtools.cfood.CMeal static method)
(caosadvancedtools.cfoods.h5.H5CFood static method)
(caosadvancedtools.example_cfood.ExampleCFood class method)
(caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood static method)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method)
(caosadvancedtools.scifolder.publication_cfood.PublicationCFood static method)
(caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood static method)
(caosadvancedtools.scifolder.simulation_cfood.SimulationCFood static method)
(caosadvancedtools.scifolder.software_cfood.SoftwareCFood static method)
get_record() (in module caosadvancedtools.cfood)
get_recordtype() (in module caosadvancedtools.cfood)
get_referenced_files() (in module caosadvancedtools.utils)
get_rt() (in module caosadvancedtools.scifolder.withreadme)
get_shared_filename() (in module caosadvancedtools.serverside.helper)
get_timestamp() (in module caosadvancedtools.serverside.helper)
get_unique_savename() (caosadvancedtools.serverside.helper.NameCollector method)
get_updates() (caosadvancedtools.cache.UpdateCache method)
get_value() (in module caosadvancedtools.crawler)
get_xls_header() (in module caosadvancedtools.scifolder.utils)
getheader() (caosadvancedtools.bloxberg.swagger_client.rest.RESTResponse method)
getheaders() (caosadvancedtools.bloxberg.swagger_client.rest.RESTResponse method)
Guard (class in caosadvancedtools.guard)
H
h5_attr_to_property() (in module caosadvancedtools.cfoods.h5)
H5CFood (class in caosadvancedtools.cfoods.h5)
h5file (caosadvancedtools.cfoods.h5.H5CFood attribute)
has_suitable_cfood() (caosadvancedtools.cfood.CMeal class method)
hash() (caosadvancedtools.suppressKnown.SuppressKnown method)
hash_entity() (caosadvancedtools.cache.IdentifiableCache static method)
HEAD() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
header() (caosadvancedtools.scifolder.withreadme.WithREADME property)
HeaderField (class in caosadvancedtools.scifolder.withreadme)
HTTPValidationError (class in caosadvancedtools.bloxberg.swagger_client.models.http_validation_error)
I
id() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
IdentifiableCache (class in caosadvancedtools.cache)
identifier (caosadvancedtools.scifolder.withreadme.DataModel attribute)
import_data() (in module caosadvancedtools.converter.labfolder_export)
import_xml() (in module caosadvancedtools.import_from_xml)
incomplete_date_converter() (in module caosadvancedtools.table_importer)
init_data_model() (in module caosadvancedtools.serverside.helper)
insert() (caosadvancedtools.cache.IdentifiableCache method)
(caosadvancedtools.cache.UpdateCache method)
insert_id_based_on_name() (in module caosadvancedtools.cfood)
insert_list() (caosadvancedtools.cache.IdentifiableCache method)
insert_missing_structure() (caosadvancedtools.cfoods.h5.H5CFood method)
invert_ids() (in module caosadvancedtools.export_related)
is_filename_allowed() (in module caosadvancedtools.scifolder.utils)
issuance_date() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
issuer() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
iteritems() (caosadvancedtools.crawler.Crawler method)
(caosadvancedtools.crawler.FileCrawler method)
(caosadvancedtools.crawler.TableCrawler method)
J
json_from_certificate() (caosadvancedtools.bloxberg.bloxberg.Bloxberg static method)
JsonSchemaDefinitionError
JsonSchemaParser (class in caosadvancedtools.models.parser)
K
kw_present() (in module caosadvancedtools.pandoc_header_tools)
L
loadpath() (in module caosadvancedtools.loadFiles)
loc() (caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError property)
logger_file() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration property)
logger_format() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration property)
looking_for() (caosadvancedtools.cfood.AbstractCFood method)
(caosadvancedtools.cfood.AbstractFileCFood method)
M
main() (in module caosadvancedtools.loadFiles)
(in module caosadvancedtools.serverside.generic_analysis)
match_item() (caosadvancedtools.cfood.AbstractCFood class method)
(caosadvancedtools.cfood.AbstractFileCFood class method)
matching_groups (caosadvancedtools.cfood.CMeal attribute)
metadata_json() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
MetadataFileMissing
missing (caosadvancedtools.datamodel_problems.DataModelProblems attribute)
module
caosadvancedtools
caosadvancedtools.bloxberg
caosadvancedtools.bloxberg.bloxberg
caosadvancedtools.bloxberg.swagger_client
caosadvancedtools.bloxberg.swagger_client.api
caosadvancedtools.bloxberg.swagger_client.api.certificate_api
caosadvancedtools.bloxberg.swagger_client.api.pdf_api
caosadvancedtools.bloxberg.swagger_client.api_client
caosadvancedtools.bloxberg.swagger_client.configuration
caosadvancedtools.bloxberg.swagger_client.models
caosadvancedtools.bloxberg.swagger_client.models.batch
caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate
caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate
caosadvancedtools.bloxberg.swagger_client.models.http_validation_error
caosadvancedtools.bloxberg.swagger_client.models.validation_error
caosadvancedtools.bloxberg.swagger_client.rest
caosadvancedtools.cache
caosadvancedtools.cfood
caosadvancedtools.cfoods
caosadvancedtools.cfoods.h5
caosadvancedtools.converter
caosadvancedtools.converter.labfolder_export
caosadvancedtools.crawler
caosadvancedtools.datainconsistency
caosadvancedtools.datamodel_problems
caosadvancedtools.example_cfood
caosadvancedtools.export_related
caosadvancedtools.guard
caosadvancedtools.import_from_xml
caosadvancedtools.loadFiles
caosadvancedtools.models
caosadvancedtools.models.data_model
caosadvancedtools.models.parser
caosadvancedtools.pandoc_header_tools
caosadvancedtools.read_md_header
caosadvancedtools.scifolder
caosadvancedtools.scifolder.analysis_cfood
caosadvancedtools.scifolder.experiment_cfood
caosadvancedtools.scifolder.generic_pattern
caosadvancedtools.scifolder.publication_cfood
caosadvancedtools.scifolder.result_table_cfood
caosadvancedtools.scifolder.simulation_cfood
caosadvancedtools.scifolder.software_cfood
caosadvancedtools.scifolder.utils
caosadvancedtools.scifolder.withreadme
caosadvancedtools.serverside
caosadvancedtools.serverside.generic_analysis
caosadvancedtools.serverside.helper
caosadvancedtools.serverside.logging
caosadvancedtools.structure_mapping
caosadvancedtools.suppressKnown
caosadvancedtools.table_converter
caosadvancedtools.table_export
caosadvancedtools.table_importer
caosadvancedtools.utils
caosadvancedtools.webui_formatter
msg() (caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError property)
N
name_beautifier() (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood static method)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood static method)
(caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood static method)
NameCollector (class in caosadvancedtools.serverside.helper)
NATIVE_TYPES_MAPPING (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient attribute)
NoValidHeader
O
OPTIONS() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
P
parameters_to_tuples() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
parse_arguments() (in module caosadvancedtools.serverside.helper)
parse_model_from_json_schema() (caosadvancedtools.models.parser.JsonSchemaParser method)
(in module caosadvancedtools.models.parser)
parse_model_from_string() (caosadvancedtools.models.parser.Parser method)
(in module caosadvancedtools.models.parser)
parse_model_from_yaml() (caosadvancedtools.models.parser.Parser method)
(in module caosadvancedtools.models.parser)
parse_responsibles() (in module caosadvancedtools.scifolder.utils)
ParseErrorsInHeader
Parser (class in caosadvancedtools.models.parser)
PATCH() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
PdfApi (class in caosadvancedtools.bloxberg.swagger_client.api.pdf_api)
POST() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
prepare_csv_export() (caosadvancedtools.table_export.BaseTableExporter method)
prepare_post_parameters() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
PRIMITIVE_TYPES (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient attribute)
print_bootstrap() (in module caosadvancedtools.serverside.helper)
print_error() (in module caosadvancedtools.serverside.helper)
print_info() (in module caosadvancedtools.serverside.helper)
print_success() (in module caosadvancedtools.serverside.helper)
print_warning() (in module caosadvancedtools.serverside.helper)
ProhibitedException
Project (caosadvancedtools.scifolder.withreadme.DataModel attribute)
proof() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
property_name_re (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute)
public_key() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch property)
Publication (caosadvancedtools.scifolder.withreadme.DataModel attribute)
PublicationCFood (class in caosadvancedtools.scifolder.publication_cfood)
PUT() (caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
put_in_container() (in module caosadvancedtools.cache)
Q
query_files() (caosadvancedtools.crawler.FileCrawler static method)
R
re_from_extensions() (caosadvancedtools.cfood.AbstractFileCFood static method)
read_field_as_list() (in module caosadvancedtools.utils)
read_file() (caosadvancedtools.table_importer.CSVImporter method)
(caosadvancedtools.table_importer.TableImporter method)
(caosadvancedtools.table_importer.TSVImporter method)
(caosadvancedtools.table_importer.XLSImporter method)
read_xls() (caosadvancedtools.table_importer.XLSImporter method)
recordtype_is_child_of() (in module caosadvancedtools.serverside.helper)
recursively_collect_related() (in module caosadvancedtools.export_related)
reference_files_from_header() (caosadvancedtools.scifolder.withreadme.WithREADME method)
reference_included_records() (caosadvancedtools.scifolder.withreadme.WithREADME method)
reference_records_corresponding_to_files() (in module caosadvancedtools.scifolder.utils)
remove_property() (caosadvancedtools.cfood.AbstractCFood static method)
replace_path_prefix() (in module caosadvancedtools.utils)
request() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
(caosadvancedtools.bloxberg.swagger_client.rest.RESTClientObject method)
reset() (caosadvancedtools.suppressKnown.SuppressKnown method)
responsible (caosadvancedtools.scifolder.withreadme.DataModel attribute)
RESTClientObject (class in caosadvancedtools.bloxberg.swagger_client.rest)
RESTResponse (class in caosadvancedtools.bloxberg.swagger_client.rest)
results (caosadvancedtools.scifolder.withreadme.DataModel attribute)
ResultTableCFood (class in caosadvancedtools.scifolder.result_table_cfood)
return_field_or_property() (in module caosadvancedtools.utils)
revisionOf (caosadvancedtools.scifolder.withreadme.DataModel attribute)
RowCFood (class in caosadvancedtools.cfood)
run() (in module caosadvancedtools.serverside.generic_analysis)
run_sql_commands() (caosadvancedtools.cache.AbstractCache method)
S
safe_insert() (caosadvancedtools.guard.Guard method)
safe_update() (caosadvancedtools.guard.Guard method)
SafeLineLoader (class in caosadvancedtools.models.parser)
sanitize_for_serialization() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
save_form() (caosadvancedtools.crawler.Crawler static method)
save_header() (in module caosadvancedtools.pandoc_header_tools)
scripts (caosadvancedtools.scifolder.withreadme.DataModel attribute)
select_header_accept() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
select_header_content_type() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
send_mail() (caosadvancedtools.crawler.Crawler static method)
(in module caosadvancedtools.serverside.helper)
separated() (in module caosadvancedtools.crawler)
set_default() (caosadvancedtools.bloxberg.swagger_client.configuration.TypeWithDefault method)
set_default_header() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
set_level() (caosadvancedtools.guard.Guard method)
set_log_level() (in module caosadvancedtools.utils)
set_parents() (caosadvancedtools.cfood.AbstractCFood static method)
set_property() (caosadvancedtools.cfood.AbstractCFood static method)
Simulation (caosadvancedtools.scifolder.withreadme.DataModel attribute)
SimulationCFood (class in caosadvancedtools.scifolder.simulation_cfood)
SoftwareCFood (class in caosadvancedtools.scifolder.software_cfood)
sourcecode (caosadvancedtools.scifolder.withreadme.DataModel attribute)
sources (caosadvancedtools.scifolder.withreadme.DataModel attribute)
special_treatment() (caosadvancedtools.cfoods.h5.H5CFood method)
string_in_list() (in module caosadvancedtools.table_importer)
string_to_person() (in module caosadvancedtools.utils)
SuppressKnown (class in caosadvancedtools.suppressKnown)
swagger_types (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch attribute)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate attribute)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate attribute)
(caosadvancedtools.bloxberg.swagger_client.models.http_validation_error.HTTPValidationError attribute)
(caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError attribute)
sync_data_model() (caosadvancedtools.models.data_model.DataModel method)
sync_ids_by_name() (caosadvancedtools.models.data_model.DataModel method)
T
table_re (caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute)
TableCrawler (class in caosadvancedtools.crawler)
TableExportError
TableImporter (class in caosadvancedtools.table_importer)
tag_msg() (caosadvancedtools.suppressKnown.SuppressKnown method)
to_debug_report() (caosadvancedtools.bloxberg.swagger_client.configuration.Configuration method)
to_dict() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch method)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate method)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate method)
(caosadvancedtools.bloxberg.swagger_client.models.http_validation_error.HTTPValidationError method)
(caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError method)
to_str() (caosadvancedtools.bloxberg.swagger_client.models.batch.Batch method)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate method)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate method)
(caosadvancedtools.bloxberg.swagger_client.models.http_validation_error.HTTPValidationError method)
(caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError method)
to_table() (in module caosadvancedtools.table_converter)
to_tsv() (in module caosadvancedtools.table_converter)
treat_project() (in module caosadvancedtools.converter.labfolder_export)
TSVImporter (class in caosadvancedtools.table_importer)
TwiceDefinedException
type() (caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_pdf_json_certificate.ControllerCertToolsGeneratePdfJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.controller_cert_tools_generate_unsigned_certificate_json_certificate.ControllerCertToolsGenerateUnsignedCertificateJsonCertificate property)
(caosadvancedtools.bloxberg.swagger_client.models.validation_error.ValidationError property)
TypeWithDefault (class in caosadvancedtools.bloxberg.swagger_client.configuration)
U
update_authorized_changes() (caosadvancedtools.crawler.Crawler static method)
update_identifiables() (caosadvancedtools.cfood.AbstractCFood method)
(caosadvancedtools.cfood.RowCFood method)
(caosadvancedtools.cfoods.h5.H5CFood method)
(caosadvancedtools.example_cfood.ExampleCFood method)
(caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood method)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood method)
(caosadvancedtools.scifolder.publication_cfood.PublicationCFood method)
(caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood method)
(caosadvancedtools.scifolder.simulation_cfood.SimulationCFood method)
(caosadvancedtools.scifolder.software_cfood.SoftwareCFood method)
update_ids_from_cache() (caosadvancedtools.cache.IdentifiableCache method)
update_matched_entity() (in module caosadvancedtools.structure_mapping)
update_params_for_auth() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient method)
update_structure() (in module caosadvancedtools.structure_mapping)
UpdateCache (class in caosadvancedtools.cache)
user_agent() (caosadvancedtools.bloxberg.swagger_client.api_client.ApiClient property)
V
val_or_none() (in module caosadvancedtools.converter.labfolder_export)
validate_cache() (caosadvancedtools.cache.IdentifiableCache method)
ValidationError (class in caosadvancedtools.bloxberg.swagger_client.models.validation_error)
verify() (caosadvancedtools.bloxberg.bloxberg.Bloxberg method)
W
was_tagged() (caosadvancedtools.suppressKnown.SuppressKnown method)
WebUI_Formatter (class in caosadvancedtools.webui_formatter)
win_path_converter() (in module caosadvancedtools.table_importer)
win_path_list_converter() (in module caosadvancedtools.table_importer)
win_paths (caosadvancedtools.scifolder.analysis_cfood.AnalysisCFood attribute)
(caosadvancedtools.scifolder.experiment_cfood.ExperimentCFood attribute)
(caosadvancedtools.scifolder.publication_cfood.PublicationCFood attribute)
(caosadvancedtools.scifolder.result_table_cfood.ResultTableCFood attribute)
(caosadvancedtools.scifolder.simulation_cfood.SimulationCFood attribute)
(caosadvancedtools.scifolder.software_cfood.SoftwareCFood attribute)
WithREADME (class in caosadvancedtools.scifolder.withreadme)
wrap_bootstrap_alert() (in module caosadvancedtools.serverside.helper)
X
XLSImporter (class in caosadvancedtools.table_importer)
Y
YamlDefinitionError
yes_no_converter() (in module caosadvancedtools.table_importer)